薛勇彪实验室 发表论文

Yongbiao Xue’s Publication List as of 2008 (*Corresponding Author)
Research Papers:
1. Liu, F., Xu, W., Tan, L., Xue, Y., Sun, C., Su, Z. (2008) Case study for
identification of indel-caused alternative expression isoforms in rice subspecies
japonica and indica by integrative genome analysis. Genomics 91:186-194
2. Liu, B., Chen, Z., Song, X., Liu, C., Zhao, X., Fang, J., Xu, W., Zhang, H., Wang,
X., Chu, C., Deng, X. W., Xue, Y., Cao, X. (2007) Oryza sativa Dicer-like 4
reveals a key role for siRNA silencing in plant development. Plant Cell
19:2705-2718
3. Li, M., Xu, W., Yang, W., Kong, Z., *Xue, Y. (2007) Genome-wide gene
expression profiling reveals conserved and novel molecular functions of the
stigma in rice (Oryza sativa L.). Plant Physiol. 144:1797-1812
4. Yang, Q., Zhang, D., Li, Q., Cheng, Z., *Xue, Y. (2007) Heterochromatic and
genetic features are consistent with recombination suppression of the
self-incompatibility (S)-locus in Antirrhinum. Plant J. 51:140-151
5. Kong, Z., Xu, W., Li, Q., *Xue, Y. (2007) Identification, expression and
functional analysis of a receptor-like cytoplasmic kinase, OsRLCK1, in rice
(Oryza sativa L.). J. Integrative Plant Biol. 49:898-907
6. Wang, X, Zhang, Y., Ma, Q., Zhang, Z., Xu, Z., Xue, Y., Bao, S., Chong, K.
(2007) SKB1-mediated symmetric dimethylation of histone H4R3 controls
flowering time in Arabidopsis. EMBO J. 26:1934-1941
7. Dai, X., Xu. Y., Ma, Q., Xu, W., Wang, T., Xue, Y., Chong, K. (2007)
Overexpression of a R1R2R3 MYB gene, OsMYB3R-2, increases tolerance to
freezing, drought, and salt stress in transgenic Arabidopsis. Plant Physiol.
143:1739-1753
8. Dai, S., Chen, T., Chong, K., Xue, Y., Li, S., Wang, T. (2007) Proteomic
identification of differentially expressed proteins associated with pollen
germination and tube growth reveals characteristics of germinated Oryza sativa
pollen. Mol. Cell. Proteomics 6:207-230
9. Zhuang, X., Jiang, J., Li, J., Ma, Q., Xu, Y., Xue, Y., Xu, Z., Chong, K. (2006)
Overexpression of OsAGAP, an ARF-GAP, interferes with auxin influx, vesicle
trafficking and root development. Plant J. 48:581-591
10. Kong, Z., Li, M., Yang, W., Xu, W., *Xue, Y. (2006) A novel nuclear-localized
CCCH-type zinc finger protein, OsDOS, is involved in delaying leaf senescence
in rice (Oryza sativa L.). Plant Physiol. 141:1376-1388
11. Huang, J., Zhao, L., Yang, Q., *Xue, Y. (2006) AhSSK1, a novel SKP1-like
protein that interacts with the S-Locus F-box protein. Plant J. 46:780-793
12. Bao, W., Zhang, W., Yang, Q., Zhang, Y., Han, B., Gu, M., Xue, Y., Cheng, Z.
(2006) Diversity of centromeric repeats in two closely related wild rice species,
Oryza officinalis and Oryza rhizomatis. Mol. Gen. Genomics. 275:421-430
13. Dai, S., Li, L., Chen, T., Chong, K., Xue, Y., Wang, T. (2006) Proteomic
analyses of Oryza sativa mature pollen reveal novel proteins associated
potentially with pollen germination and tube growth. Proteomics 6:2504-2529
14. Guo, Y., Zhang, Y. and *Xue, Y. (2006) Petunia Germinating Pollen S/D3
interacts with S-RNases in Petunia hybrida. J. Integrative Plant Biol.
48:584-590
15. Dong, L., Wang, L., Zhang, Y., Zhang, Y., Deng, X., *Xue, Y. (2006) An
auxin-inducible F-box protein CEGENDUO negatively regulates auxin-mediated
lateral root formation in Arabidopsis. Plant Mol Biol. 60:599-616
16. Lan, L., Li, M., Lai, Y., Xu, W., Kong, Z., Ying, K., Han, B., *Xue, Y. (2005)
Microarray analysis reveals similarities and variations in genetic programs
involved in pollination/fertilization and stress responses in rice (Oryza sativa L.).
Plant Mol Biol 59:151-164
17. Stolc, V., Li, L., Wang, X., Li, X., Su, N., Tongprasit, W., Han, B., Xue, Y., Li, J.,
Snyder, M., Gerstein, M., Wang, J., Deng X. W. (2005) A pilot study of
transcription unit analysis in rice using oligonucleotide tiling-path microarray.
Plant Mol Biol 59:137-149
18. Wang, Z., Liang, Y., Li, C., Xu, Y., Lan, L., Chen, C., Xu, Z., *Xue, Y., Chong,
K. (2005) Identification of anther development-related genes by gene expression
profiling with a 10-K cDNA microarray in rice (Oryza sativa L.). Plant Mol Biol
58:721-737
19. Causier, B., Castillo, R., Zhou, J., Ingram, R., Xue, Y., Schwarz-Sommer, Z.,
Davies, B. (2005) Evolution in action：following function in duplicated floral
homeotic genes. Curr. Biol. 15:1508-1512
20. Jiao, Y., Jia, P., Wang, X., Su, N., Yu, S., Zhang, D., Ma, L., Feng, Q., Jin, Z., Li,
L., Xue, Y., Cheng, Z., Zhao, H., Han, B., Deng, X. W. (2005) A tiling
microarray expression analysis of rice chromosome 4 suggests a chromosomal
level regulation of transcription. Plant Cell 17:1641-1657
21. Zhang, D., Yang, Q., Bao, W., Zhang, Y., Han, B., Xue, Y., Cheng, Z. (2005)
Cytological characterization of the Antirrhinum majus genome. Genetics
169:325-335
22. Zhuang, X., Xu, Y., Chong, K., Lan, L., Xue, Y., Xu, Z. (2005) OsAGAP, an
ArfGAP from rice, regulates root development mediated by auxin in Arabidopsis.
Plant, Cell and Environ 28:147-156
23. Wang, H. and *Xue, Y. (2005) Subcellular localization of the S-locus F-box
protein AhSLF-S2 in pollen and pollen tubes of self-incompatible Antirrhinum. J.
Integrative Plant Biol. 47:76-83
24. Wang, L., Dong, L., Zhang, Y. E., Zhang, Y., Wu, W., Deng, X.W., *Xue, Y.
(2005) Genome-wide analysis of S-locus F-box –like genes in Arabidopsis
thaliana. Plant Mol Biol 56:929-945
25. Qiao, H., Wang, F., Zhao, L., Zhou, J., Lai, Z., Zhang, Y., Robbins, T., Y., *Xue,
Y. (2004) The F-box protein AhSLF-S2 controls the pollen function of
S-RNase-based self-incompatibility. Plant Cell 16:2307-2322
26. Lan, L., Chen, W., Lai, Y., Suo, J., Kong, Z., Li, C., Lu, Y., Zhang, Y., Zhao, X.,
Zhang, X., Han, B., Cheng, J., *Xue, Y. (2004) Monitoring of gene expression
profiles and isolation of candidate genes involved in pollination and fertilization
in rice (Oryza sativa L.) using a 10K cDNA microarray. Plant Mol Biol
54:471-487
27. Zhang, Y., Huang, Y., Zhang, L., Li, Y., Lu, T., Lu, Y., Feng, Q., Zhang, Q.,
Cheng, Z., Xue, Y., Wing, R. A., Han, B. (2004) Structural features of the rice
chromosome 4 centromere. Nucl Acids Res 32:2023-2030
28. Qiao, H., Wang, H., Zhao, L., Zhou, J., Huang, J., Zhang, Y., *Xue, Y. (2004)
The F-box protein AhSLF-S2 physically interacts with S-RNases that are
inhibited by the ubiquitin/26S proteasome pathway of protein degradation during
compatible pollination in Antirrhinum. Plant Cell 16:582-295
29. Suo, J., Pu, L., Liang, X., *Xue, Y. (2004) Identification of an
endothelium-specific gene GhIAA16 in cotton (Gossypium hirsutum L.). Acta
Bot. Sin. 46:472-479
30. Wang, H., Ouyang, J., *Xue, Y. (2004) A facile procedure for efficient plantlet
regeneration from self-incompatible hybrids in Antirrhinum. Plant Cell Organ
Tissue Cult. 76:61-65
31. Chen, G., Ma, W., Huang, Z., Xu, T., *Xue, Y., Shen, Y. (2003) Isolation and
characterization of TaGSK1 involved in wheat salt tolerance. Plant Sci.
165:1369-1375
32. Zhou, J., Wang, F., Ma, W., Zhang, Y., Han, B., *Xue, Y. (2003) Structural and
transcriptional analysis of S locus F-box (SLF) genes in Antirrhinum. Sex. Plant
Reprod. 16:165-177
33. Duan, Y., Wu, W., Liu, H., Zhang, D., Zhou, Y., Pan, R., Lin, L., Chen, Z., Guan,
H., Mao, D., Li, W., *Xue, Y. (2003) Genetic analysis and gene mapping of
leafy head (lhd), a mutant blocking the differentiation of rachis branches in rice
(Oryza sativa L.). Chin. Sci. Bull. 48:2201-2205
34. Suo, J., Liang, X., Pu, L., Zhang, Y., *Xue, Y. (2003) Identification of
GhMYB109 encoding a R2R3 MYB transcription factor that expressed
specifically in fiber initials and elongating fibers in cotton. BBA 1630:25-34
35. Liang, L., Huang, J., *Xue, Y. (2003) Identification and evolutionary analysis of
a relic S-RNase in Antirrhinum. Sex. Plant Reprod. 16:17-22
36. Ma, W., Zhou, J., Lai, Z., Zhang, Y., *Xue, Y. (2003) The self-incompatibility (S)
locus resides in a pericentromeric region in Antirrhinum. Acta Bot. Sin. 45:47-52
37. Duan, Y., Li, W., Wu, W., Pan, R., Zhou, Y., Qi, J., Lin, L., Chen, Z., Mao, D., Liu,
H., Zhang, D., *Xue, Y. (2003) Genetic analysis and mapping of gene Fzp(t)
controlling spikelet differentiation in rice. Sci China (C) 46:328-334
38. Liang, L., Lai, Z., Ma, W., Zhang, Y. and *Xue, Y. (2002) AhSL28, a
senescence-and phosphosphate starvation-induced S-like RNase gene in
Antirrhinum. BBA 1579:64-71
39. Feng, Q., Zhang, Y., Hao, P., Wang, S., Fu, G., Huang, Y., Li, Y., Zhe, J., Liu, Y.,
Hu, X., Jia, P., Zhang, Y., Zhao, Q., Ying, K., Yu, S., Tnag, Y., Weng, Q., Zhang,
L., Lu, Y., Mu, J., Lu, Y., Zhang L. S., Yu, Z., Fan, D., Liu, X., Lu, T., Li, C., Wu,
Y., Sun, T., Lei, H., Li, T., Hu, H., Guan, J., Wu, M., Zhang, R., Zhou, B., Chen,
Z., Chen, L., Jin, Z., Wang, R., Yin, H., Cai, Z., Ren, S., Lv, G., Gu, W., Zhu, G.,
Ti, Y., Jia, J., Zhang, Y., Chen, J., Kang, H., Chen, X., Shao, C., Sun, Y., Hu, Q.,
Zhang, X., Zhang, W., Wang, L., Ding, C., Sheng, H., Gu, J., Chen, S., Ni, L.,
Zhu, F., Chen, W., Lan, L., Lai, Y., Cheng, Z., Gu, M., Jiang, J., Li, J., Hong, G.,
Xue, Y., Han, B. (2002) Sequence and analysis of rice chromosome 4. Nature
420:316-320
40. Zhao, Q., Zhang, Y., Cheng, Z., Chen, M., Wang, S., Feng, Q., Huang, Y., Li, Y.,
Tang, Y., Zhou,B., Chen, Z., Yu, S., Zhu,J., Hu, X., Mu,J., Ying, K., Hao, P.,
Zhang, L., Lu, Y., Zhang, L. S., Liu, Y., Yu, Z., Fan, D., Weng, Q., Chen, L., Lu,
T., Liu, X., Jia, P., Sun, T., Wu, Y., Zhang, Y., Lu, Y., Li, C., Wang, R., Lei,H., Li,
T., Hu, H., Wu, M., Zhang, R., Guan, J., Zhu, J., Fu, G., Gu, M., Hong, G., Xue,
Y., Wing, R., Jiang, J., Han, B. (2002) A fine physical map of the rice
chromosome 4. Genome Res. 12:817-823
41. Lai, Z., Ma, W., Han, B., Liang, L., Zhang, Y., Hong, G., *Xue, Y. (2002) An
F-box gene linked to the self-incompatibility (S) locus of Antirrhinum is
expressed specifically in pollen and tapetum. Plant Mol. Biol. 50:29-41
42. Xu, H., Weterings, K., Vriezen, W., Feron, R., Xue, Y., Derksen, J., Mariani, C.
(2002) Isolation and characterization of male-germ-cell transcripts in Nicotiana
tabacum. Sex. Plant Reprod. 14:339-346.
43. Chen, W., Tang, D., Suo, J., Zhang, Y., *Xue, Y. (2001) Expressional profiling of
genes related to pollination and fertilization in rice. C. R. Acad. Sci. Ser.III,
324:1111-1116.
44. Gao, Z., *Xue, Y. and Dai, J. (2001) cDNA-AFLP reveals that maize resistance to
Biopolaris maydis is associated with the induction of multiple defense-related
genes. Chin. Sci. Bull. 46:1454-1458
45. Cheng, Y., Pu, T., *Xue, Y. and Zhang, C. (2001) PcTGD, a highly expressed
gene in stem, is related to water stress in reed (Phragmites communis Trin.). Chin.
Sci. Bull. 46:850-854.
46. Ding, X., Lu, L. and Xue, Y. (2001) Cloning of ACC oxidase gene in fruit of
Litchi chinesis Sonn. And its expression in E. coli. Acta Hort. (ISHS)
558:161-165
47. Gao, Z., *Xue, Y. and Dai, J. (2000) Pathogenetic site of Bipolaris
maydis-derived C toxin in maize. Chin. Sci. Bull. 45：622-626
48. ang, H. and *Y Xue, Y. (2000) Expression of self-incompatibility ribonucleases
of Antirrhinum in Escherichia coli. Chin. Sci. Bull. 45：512-515
49. *Xue, Y. (2000) Establishment of the self-incompatibility (S) locus-directed
transposon tagging system in Antirrhinum. Acta Bot. Sin. 42:408-415
50. Qi, W., Yang, H., Xue, Y., Li, W. and Hu, S. (1999) Inheritance of chloroplast and
mitochondrial DNA in Chinese fir (Cunninghamia lanceolata). Acta Bot. Sin.
41：695-699
51. *Xue, Y., Tang, D., Zhang, Y. and Li, W. (1998) Isolation of candidate R disease
resistance genes from rice. Chin. Sci. Bull. 43:497-500
52. Xue, Y., Carpenter, R., Dickinson, H. G. and Coen, E. S. (1996) Origin of allelic
diversity in Antirrhinum S locus RNase. Plant Cell. 8: 805-814.
53. Creissen, G., Reynolds, B., Xue, Y. and Mullineaux, P. (1995) Simultaneous
targeting of pea glutathione reductase and of a bacterial fusion protein to
chloroplasts and mitochondria in transgenic tobacco. Plant J. 8: 167-175.
54. Kroon, J., Souer, E., de Graaff, A., Xue Y., Mol, J. and Koes, R. (1994) Cloning
and structural analysis of the anthocyanin pigmentation locus Rt of Petunia
hybrida: characterization of insertion sequences in two mutant alleles. Plant J. 5:
69-80.
55. Xue, Y., Collin, S., Davies, D. R. and Thomas, C. M. (1994) Differential
screening of mitochondrial cDNA libraries from male fertile and cytoplasmic
male sterile sugarbeet reveals genome rearrangment at atp6 and atpA loci. Plant
Mol. Biol. 25: 91-103.
56. Dekker, E., Woolston, C., Xue, Y., Cox, B. and Mullineaux, P. (1991) Transcript
mapping reveals different expression strategies for the bicistronic RNAs of the
geminvirus wheat dwarf virus. Nucl. Acids Res. 19: 4075-4081.
57. Xue, Y., Davies, D. R. and Thomas, C. M. (1990) Sugar beet mitochondria
contain an open reading frame showing extensive sequence homology to the
subunit 2 gene of the NADH: ubipuinone reductase complex. Mol. Gen. Genet.
221: 195-198.
58. Xue, Y., Thomas, C. M. and Davies, D. R. (1989) Nucleotide sequence and
transcription of the sugar beet mitochondrial F0F1-ATPase subunit 9 gene. Nucl.
Acids Res. 17: 8857.

Reviews:
1. Han, B., Xue, Y., Li, J., Deng, X., Zhang, Q. (2007) Rice functional genomics
7
research in China. Phil. Trans. R. Soc. B. 362:1009-1021
2. Huang, J., Zhao, L., *Xue, Y. (2007) Molecular control of S-RNase-based
self-incompatibility. Pages 63-67 in Z. Xu et al. (eds.) Biotechnology and
sustainable agriculture 2006 and beyond, Springer
3. Wang, Y., *Xue, Y. and *Li, J. (2005) Towards molecular breeding and
improvement of rice in China. Trends Plant Sci. 10:610-614
4. Mueller, L. A., Tanksley, S. D., Giovannoni, J. J., van Eck, J., Stack, S., Choi, D.,
Kim, B. D., Chen, M., Cheng, Z., Li, C., Ling, H., Xue, Y., Seymour, G., Bishop,
G., Bryan, G., Sharma, R., Khurana, J., Tyagi, A., Chattopadhyay, D., Singh, N.
K., Stiekema, W., Lindout, P., Jesse, T., Lankhorst, R. K., Bouzayen, M., Shibata,
D., Tabata, S., Granell, A., Botella, M. A., Giuliano, G., Frusciante, L., Causse,
M., Zamir, D. (2005) The tomato sequencing project, the first cornerstone of the
International Solanaceae Project (SOL). Comp. Funct. Genom. 6:153-158
5. *Xue, Y., Li, J., Xu, Z. (2003) Recent highlights of the China Rice Functional
Genomics Program. Trends Genet. 19:390-394
6. *Xue, Y., Z. Xu (2002) An introduction to the China Rice Functional Genomics
Program. Comp. Fun. Genom. 3:161-163
7. Han, B. and *Xue, Y. (2003) Genome-wide intraspecific DNA-sequence
variations in rice. Curr. Opin. Plant Biol. 6:134-138
8. Wang, H., Huang, J., Lai, Z., *Xue, Y. (2002) F-box proteins in flowering plants.
Chin. Sci. Bull. 47:1497-1501
9. *Xue, Y., Cui, H., Lai, Z., Ma, W., Liang, L., Yang, H., Zhang, Y. (2001)
S-RNases and self and non-self pollen recognition in flowering plants. Pages
149-155 in G. Xue et al. (eds.) Gene families: Studies of DNA, RNA, Enzymes
and Proteins, World Scientific
10. Cui, H., Lai, Z. and *Xue, Y. (2001) A rewarding fifteen years: From SLG to
SCR/SP11. Acta Bot. Sin. 43:1-5
11. *Xue, Y. and Ingram, G. (1993) Divergence in the role of MADS box genes in
the determination of floral organ identity. BioEssays. 15: 691-693.

Proceeding Books:
1. Xue, G., Xue, Y., Xu, Z., Holmes, R., Hammond, G. L. and Lim, H. A. (eds.)
8
(2001) Gene Families: Studies of DNA, RNA, Enzymes and Proteins., World
Scientific
2. Xu, Z., Li, J., Xue, Y. and Yang, W. (eds.) (2007) Biotechnology and
Sustainable Agriculture 2006 and Beyond, Springer
Patents granted
1. Gametophytic pollen self-incompatibility gene and use thereof. Inventors: Xue, Y.,
Lai, Z., Zhang, Y., Chinese patent number: ZL00132464.0 (2004).
2. A gene for cotton fiber number and quality control and use thereof. Inventors: J.
Suo, J., Liang, X., Zhang, Y., Xue, Y., Chinese patent number: ZL02145967.3
(2006).
3. Use of an Arabidopsis drought tolerance gene ADT in breeding drought tolerant
crops, inventors: Zhang, Y., Xue, Y., Dong, L., Wang, L., Wu, W., Chinese patent
numbers: ZL02145967.3 (2007).
4. A gene controlling plant architecture and use thereof. Inventors: Wang, L., Dong,
L., Xue, Y., Chinese patent number: ZL200310102202.7 (2007).