陈铭 副教授 植物生理学与生物化学国家重点实验室
陈铭 副教授
浙江大学 生命科学学院
主要研究领域：生物信息学，系统生物学
电话: +86 571 88206499
传真: +86 571 88206133
电子信箱: mchen@zju.edu.cn
个人经历
2005.3-: 浙江大学生命科学学院
2006.7-2006.8: 德国DAAD高级访问学者
2004-2005.3: 德国Bielefeld大学生物信息学博士后工作
2001-2004: 德国Bielefeld大学生物信息学博士研究生院，获生物信息学博士学位
2000-2001: 获德国Sachsen-Anhalt州科学和艺术部政府奖学金，自费留学Magdeburg大学计算机学院，攻读生物信息学博士学位，后转入德国Bielefeld大学生物信息学博士研究生院
1998-1999: 硕士毕业留校任教于浙江工业大学生物与环境工程学院
1995-1998: 浙江工业大学，生物化学工程专业，硕士研究生
1991-1995: 浙江工业大学，生物化学工程专业本科，后免试直升进入硕士研究生阶段
发表论文
2007:
Liming Du, Fangchan Jiao, Jun Chu, Ming Chen*, Ping Wu*
The Two-component Signal System in Rice (Oryza sativa L.): A Genome-Wide Study of Cytokinin Signal Perception and Transduction
Genomics, accepted for publication.
何飞，施清芸，陈铭*，吴平*
RiceDB：基于Web界面的水稻基因芯片注释整合数据库
中国水稻科学, in press.
2006:
Xiaohui Chen, Ming Chen*, Kaida Ning
BNArray: An R package for constructing gene regulatory networks from microarray data by using Bayesian network
Bioinformatics, 22: 2952-2954.
陈晓辉，宁开达，陈铭*
基于大规模DNA 微阵列数据的调控亚网络的重建
生物信息学中的智能计算理论与研究方法（黄德双等主编），pp.65-69.
Ming Chen, Fei He, Qingyun Shi, Ping Wu
A novel and integrative approach for rice gene expression an annotation and functional analysis
2nd International Rice Congress, Oct. 9-13, New Delhi, India.
陈铭
整合生物信息学
计算机教育, 9: 7-10.
Ming Chen, Ralf Hofestaedt
Prediction and Alignment of Metabolic Pathways
In Bioinformatics of Genome Regulation and Structure II (Nikolay Kolchanov ed.), pp.355-365.
Ming Chen, Ralf Hofestaedt
A Medical Bioinformatics Approach for Metabolic Disorders: Biomedical Data Prediction, Modeling and Systematic Analysis
Journal of Biomedical Informatics, 39(2): 147-159.
2005:
Ming Chen, Andreas Freier, Ralf Hofestaedt
Bioinformatics Approaches for Metabolic Pathways
In Handbook of Genome Research (Christoph W. Sensen ed.), pp.461-490.
Zheng Ye, Huan Xu, Qichao Tu, Shu Hong, Tiansheng Xie, Di Xia, Ming Chen*
A Web-based Platform for Drug Metabolism Research
2005 Hangzhou International Conference on Drug Metabolism, Oct. 18th-20th, Hangzhou, China.
Sridhar Hariharaputran, Ming Chen and Ralf Hofest?t
Alignment and Classification of Signaling Pathways
German Conference on Bioinformatics, Oct. 5th-7th, Hamburg, Germany.
Ming Chen, Ralf Hofest?dt
Integrative Analysis of Metabolic Disorders by Means of Medical Bioinformatics
27th Annual International Conference of the IEEE Engineering In Medicine and Biology Society (EMBS), 2005, Sep.1-4, Shanghai, China. pp. 228-231.
Ming Chen
Systems Biology Brings Life Sciences Closer
Genomics, Proteomics & Bioinformatics, 3(3): 194-196.
罗辽复，陈铭，张文广
生物信息学培训班讲义
内蒙古农业大学.
张文广，陈铭
绒山羊分子生物学数据库的设计与构建
中国生物工程杂志, 25(B04): 199-203.
Ming Chen
Structural Analysis of Generalized and Specific Biological Networks
Metabolic Pathway Analysis, MPA'05, 2005, March 3-4, Jena, Germany.
Ming Chen, Ralf Hofestaedt
An algorithm for linear metabolic pathway alignment
In Silico Biology, 5: 111-128.
2004:
Ming Chen, Ralf Hofestaedt
PathAligner: Metabolic Pathway Retrieval and Alignment
Applied Bioinformatics, 3(4), 241-252.
Ralf Hofestaedt, Ming Chen
Metabolic Pathway Prediction/Alignment
Proceedings of the Fourth International Conference on Bioinformatics of Genome Regulation and Structure (BGRS'2004), July 25-30, 2004, Novosibirsk, Russia, Vol. 2, 68-72.
Ming Chen, Ralf Hofestaedt
Web-based Information Retrieval System for the Prediction of Metabolic Pathways
IEEE Transactions on Nanobioscience, 3(3), 192-199.
Ming Chen
In Silico Systems Analysis of Biopathways
PhD Thesis (Dr. rer. nat), Faculty of Technology, Bielefeld University, Bielefeld, Germany.
Ming Chen
A Systems Analysis of Urea Cycle Disorders
3rd BREW: Bioinformatics Research & Education Workshop, 2004, April 26-28, Helsinki, Finland.
陈铭
后基因组时代的生物信息学
生物信息学, 2(2): 29-34.
Ming Chen, Susana Lin and Ralf Hofestaedt
STCDB: Signal ransduction Classification Database
Nucleic Acids Research, 32(1), D456-D458.
2003:
Ming Chen and Ralf Hofestaedt
Quantitative Petri net model of gene regulated metabolic networks in the cell
In Silico Biology, 3(3), 347-365.
Ming Chen, Susana Lin and Ralf Hofestaedt
Recommendations for Classification and Nomenclature of Signal Transduction
In: Signal Transduction: Receptors, Mediators and Genes - abstract proceedings of 7th Meeting of the Signal Transduction Society, 2003, Nov. 6-8, Weimar, Germany, Vol.3-4/2003: 134.
Susana Lin, Ming Chen and Ralf Hofestaedt
Signaling Network triggerable by Trypanosoma cruzi through Calcium
In: Signal Transduction: Receptors, Mediators and Genes - abstract proceedings of 7th Meeting of the Signal Transduction Society, 2003, Nov. 6-8, Weimar, Germany, Vol.3-4/2003: 174.
Ming Chen
Reconstruction of Metabolic Pathways via a Web-Based Biological Information Retrieval System
2nd BREW: Bioinformatics Research & Education Workshop, 2003, April 28-40, ZIF-Uni, Bielefeld, Germany.
2002:
Ming Chen, Andreas Freier, Jacob Koehler, Alexander Rueegg
The Biology Petri Net Markup Language
In: Juerg Desel, Mathias Weske (Hrsg.), Lecture Notes in Informatics - proceedings of Promise'2002, Oct. 9-11, 2002, Potsdam, Germany, Vol. 21, 150-161.
Ming Chen
Modelling and Simulation of Metabolic Networks: Petri Nets Approach and Perspective
Proceedings of the 16th European Simulation Multiconference (ESM'2002), June 3-5, 2002, Darmstadt, Germany, pp: 441-444.
Ming Chen
Systems Biology Modeling and Simulating Metabolic Networks with Petri Nets
In Poster Abstracts' Book of the ICSB'02 - International Conference on Systems Biology, 2002, Dec. 13-15, Stockholm, Sweden, p85.
Ming Chen
Matabolic Pathway Alignment and Alternative Pathways Indentification
In Poster Abstracts' Book of the ECCB'02 (in conjunction with the GCB'02) - European Conference on Computational Biology, 2002, Oct. 6-9, Saarbrücken, Germany, p22: 40-41.
Ming Chen
Pairwise Metabolic Pathway Alignment
In abstract of the WABI'02 - 2nd Workshop on Algorithms in Bioinformatics, 2002, Sep. 16-21, Rome, Italy.
Ming Chen, Andreas Freier and Ralf Hofestaedt
Graph Theory Based Metabolic Network Initial Analysis and Metabolic Pathway Alignment
the abstract proceeding of "ICM 2002, The 3rd International Conference on Mathematical Biology", 2002, Aug. 15-18, Guilin, China.
Ming Chen and Andreas Freier
Petri Net Based Modelling and Simulation of Metabolic Networks in the Cell
1st BREW: Bioinformatics Research & Education Workshop, 2002, April 17-19, EMBL-EBI, Cambridge, England.
2000-2001:
Ming Chen, Ralf Hofestaedt and Andreas Freier
A Workable Approach for Modeling and Simulation of Biochemical Processes with a Hybrid Petri nets System
1st International MTBio Workshop on Function and Regulation of Cellular Systems: Experiments and Models, 2001, June 24-30, Dresden, Germany, p20.
Ming Chen
Modelling the glycolysis metabolism using hybrid petri nets
DFG-Workshop im Rahmen des DFG-Schwerpunktes Informatikmethoden zur Analyse und genomischer Datenmengen, 2000, Mai 19-20, Magdeburg, Germany.
Andreas Freier, Ming Chen und Ralf Hofestaedt
MetabSim - Regelbasierte Simulation Metabolischer Prozesse
DFG-Workshop im Rahmen des DFG-Schwerpunktes Informatikmethoden zur Analyse und genomischer Datenmengen, 2000, Mai 19-20, Magdeburg, Germany.
2000以前:
陈铭,李燕
天然植物食用色素的开发利用
中国野生植物资源,2000,(04):25-28.
Zhou Xiaoyun, Chen Ming
Kinetics of Continuous Biodegradation of Pesticide Organic Wastewater by Active Carbon & Activated Sludge
J. Environment Science, 1999, 11(1): 118-123.
陈铭,周晓云
发酵甘油的制备、提取与纯化
日用化学工业,1999,(06):33-38.
钱俊青,陈铭
稻壳吸附剂净化水中有机污染物的研究
环境工程,1999,(03)
何昕,吕伯升,陈铭,周晓云
降解农药有机废水连续反应动力学
水处理技术,1999,(02)
陈铭,李燕
茶饮料的开发与高新技术的应用
中国茶叶加工,1999,(03)
陈铭,钱俊青
农副产品下脚料生产单细胞蛋白
现代商贸工业,1999,(01)
钱俊青,陈铭
膜的氧化清洗再生方法研究
膜科学与技术,1998,(03):60-63.
钱俊青,陈铭
啤酒除菌超滤膜清洗技术的研究
中国酿造,1998,(01):16-18.
王普,虞炳钧,陈铭,吴绵斌
玉米皮渣直接固态发酵生产饲料蛋白的研究
饲料工业,1997,(06):27-29.
陈铭,周晓云
固定化细胞技术在有机废水处理中的应用与前景
水处理技术,1997,(02):38-44.
钱俊青,陈铭,李燕
食品工业用的超滤膜的再生
食品科学,1995,(06):38-41.
科研项目情况
1. 德国DFG项目：MARG - Modelling and Animation of Regulatory Gene Networks.
2. 德国BMBF项目：CELLECT – Cellular eucaryotic proteome-code deciphering technology
3. 国家教育部“春晖计划”合作项目：“内蒙古生物资源信息系统”
4. 国家自然科学基金项目（30500106）：水稻(Oryza sativa)磷代谢网络的预测重建及其系统生物学的研究
